Writes the Connectome (the fiber group, fe.fg) taking care of the coordinate system. fg_file = feConnectomeWrite(fe,[saveDir],[fileType]) Copyright (2013-2014), Franco Pestilli, Stanford University, pestillifranco@gmail.com.
0001 function fg_file = feConnectomeWrite(fe,saveDir,fileType) 0002 % Writes the Connectome (the fiber group, fe.fg) taking care of the coordinate system. 0003 % 0004 % fg_file = feConnectomeWrite(fe,[saveDir],[fileType]) 0005 % 0006 % 0007 % Copyright (2013-2014), Franco Pestilli, Stanford University, pestillifranco@gmail.com. 0008 0009 % Default directory for saving the fiber group is the LIFE folder where the 0010 % the fe structure is saved by default. 0011 if notDefined('saveDir'),saveDir = feGet(fe,'save dir');end 0012 if notDefined('fileType'),fileType = 'mat';end 0013 0014 % Build a file name. 0015 fg_file = fullfile(saveDir,sprintf('%s_FG',feGet(fe,'name'))); 0016 0017 % Write the fiber group always in acpc coordinates, 0018 % Also, we always save as .mat 0019 fprintf('[%s] Saving connectome: %s.%s\n',mfilename,fg_file,fileType) 0020 fgWrite(feGet(fe,'fg acpc'),fg_file,fileType); 0021 % Note .pdb seem to not save correctly by fgWrite. 0022 % Maybe a problem with pathwaysInfo? 0023 0024 return